Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LAML rs75152896 chr6:34477793 G/A 0.000168 106 16.27 8.1 0 KM Plot
LAML rs75197080 chr16:71752576 C/G 0.000153 111 15.23 13.1 0 KM Plot
LAML rs75218563 chr16:71815702 T/C 0.000176 109 16.17 11.13 0 KM Plot
LAML rs752375 chr10:863329 C/T 2.2E-6 110 16.3 16.2 7.13 KM Plot
LAML rs752594 chr2:3208276 C/T 3.9E-5 111 0 16.3 15.17 KM Plot
LAML rs752595 chr2:3208277 A/G 5.94E-5 111 0 14.7 15.2 KM Plot
LAML rs75362055 chr19:33908493 C/T 5.18E-5 110 16.17 12.17 3 KM Plot
LAML rs75449530 chr19:33953831 T/C 1.9E-5 111 16.77 10.67 3 KM Plot
LAML rs75474551 chr6:160409894 G/T 3.98E-5 108 12.18 37.57 0 KM Plot
LAML rs75489661 chr6:34458325 C/G 0.000156 106 16.3 9.12 0 KM Plot
LAML rs75496286 chr6:134290449 A/G 0.000172 109 16.17 10.13 1 KM Plot
LAML rs75531668 chr2:240556715 G/A 0.000163 107 13.15 33.47 0 KM Plot
LAML rs75541809 chr19:33939614 G/A 1.9E-5 111 16.77 10.67 3 KM Plot
LAML rs75547222 chr2:3160476 A/T 0.000114 110 15.2 16.3 0 KM Plot
LAML rs7561254 chr2:19948999 G/A 2.21E-12 111 17.78 14.13 0 KM Plot